Decrease Cash in Bank (No Check) and offset to multiple GL Accounts.
1. Insert the Decrease Cash transaction as usual by going to Checkbook > Transactions > Decrease Cash in Bank.
Post against your GL Suspense Account.
2. Go to Ledger > Enter Transactions.
Insert a CREDIT on the GL Bank Account for the full amount.
Insert DEBITS on the distributed GL Accounts for each amount.
At the end of this transaction the balance on the Suspense Account should be zero, if it started at zero.